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Literature record

Centromere protein I (CENPI) is a candidate gene for X-linked steroid sensitive nephrotic syndrome.

PMID 31912435 | DOI 10.1007/s40620-019-00692-1 · Journal of nephrology · 2020

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BACKGROUND: Individuals with proteinuria in association with hypoalbuminemia, edema, and hyperlipidemia are considered as having nephrotic syndrome (NS). NS is the most common kidney disease seen in the paediatric age group. NS is usually classified into steroid resistant nephrotic syndrome (SRNS) and steroid sensitive nephrotic syndrome (SSNS). More than 58 genes have been identified as a monogenic cause of SRNS, however, the genetic architecture of childhood SSNS remains poorly understood. METHODS: Here in this study, we performed sequencing of 66 NS candidate genes followed by whole genome SNP genotyping and whole exome sequencing in SSNS families with multiple affected individuals. RESULTS: NS candidate genes sequencing did not identify any pathogenic variant in the known genes. Homozygosity mapping based on an autosomal recessive model failed to detect any shared loss of heterozygosity region in the genome. An unbiased and hypothesis-free exome data analysis identified a missense variant (c.383G>A; p.Arg128Gln) in the CENPI gene. Sanger sequencing of both parents, unaffected and affected individuals confirmed an X-linked inheritance pattern of the variant (c.383G>A) with SSNS phenotype. The variant (c.383G>A) is very rare and is potentially damaging. CONCLUSION: Collectively, these observations suggest that a specific pathogenic link between SSNS development and alteration in CENPI exists. However, human mutations in CENPI causing SSNS have not been reported hitherto. Identification of genetic defects underlying SSNS will help in understanding the precise aetiology of SSNS and improved management of children with NS.

Validated evidence

TypeEntitySource evidenceConfidenceExtractor
geneCENPI“Centromere protein I (CENPI) is a candidate gene for X-linked steroid sensitive nephrotic syndrome.”0.98hgnc_dict_v1
phenotypenephrotic syndrome“Centromere protein I (CENPI) is a candidate gene for X-linked steroid sensitive nephrotic syndrome.”0.98phenotype_alias_lexicon_v2
phenotypedyslipidemia“BACKGROUND: Individuals with proteinuria in association with hypoalbuminemia, edema, and hyperlipidemia are considered as having nephrotic syndrome (NS).”0.93phenotype_alias_lexicon_v2
variantc.383G>A“An unbiased and hypothesis-free exome data analysis identified a missense variant (c.383G>A; p.Arg128Gln) in the CENPI gene.”0.95hgvs_regex_v1
variantp.Arg128Gln“An unbiased and hypothesis-free exome data analysis identified a missense variant (c.383G>A; p.Arg128Gln) in the CENPI gene.”0.95hgvs_regex_v1