Inactivation of DRG1, encoding a translation factor GTPase, causes a recessive neurodevelopmental disorder.
PMID 37179472 | DOI 10.1016/j.gim.2023.100893 · Genetics in medicine : official journal of the American College of Medical Genetics · 2023
PURPOSE: Developmentally regulated Guanosine-5'-triphosphate-binding protein 1 (DRG1) is a highly conserved member of a class of GTPases implicated in translation. Although the expression of mammalian DRG1 is elevated in the central nervous system during development, and its function has been implicated in fundamental cellular processes, no pathogenic germline variants have yet been identified. Here, we characterize the clinical and biochemical consequences of DRG1 variants. METHODS: We collate clinical information of 4 individuals with germline DRG1 variants and use in silico, in vitro, and cell-based studies to study the pathogenicity of these alleles. RESULTS: We identified private germline DRG1 variants, including 3 stop-gained p.Gly54∗, p.Arg140∗, p.Lys263∗, and a p.Asn248Phe missense variant. These alleles are recessively inherited in 4 affected individuals from 3 distinct families and cause a neurodevelopmental disorder with global developmental delay, primary microcephaly, short stature, and craniofacial anomalies. We show that these loss-of-function variants (1) severely disrupt DRG1 messenger RNA/protein stability in patient-derived fibroblasts, (2) impair its GTPase activity, and (3) compromise its binding to partner protein ZC3H15. Consistent with the importance of DRG1 in humans, targeted inactivation of mouse Drg1 resulted in preweaning lethality. CONCLUSION: Our work defines a new Mendelian disorder of DRG1 deficiency. This study highlights DRG1's importance for normal mammalian development and underscores the significance of translation factor GTPases in human physiology and homeostasis.
Validated evidence
| Type | Entity | Source evidence | Confidence | Extractor |
|---|---|---|---|---|
| gene | DRG1 | “Inactivation of DRG1, encoding a translation factor GTPase, causes a recessive neurodevelopmental disorder.” | 0.98 | hgnc_dict_v1 |
| gene | ZC3H15 | “We show that these loss-of-function variants (1) severely disrupt DRG1 messenger RNA/protein stability in patient-derived fibroblasts, (2) impair its GTPase activity, and (3) compromise its binding to partner protein ZC3H15.” | 0.98 | hgnc_dict_v1 |
| phenotype | neurodevelopmental disorder | “Inactivation of DRG1, encoding a translation factor GTPase, causes a recessive neurodevelopmental disorder.” | 0.98 | phenotype_alias_lexicon_v2 |
| phenotype | developmental delay | “These alleles are recessively inherited in 4 affected individuals from 3 distinct families and cause a neurodevelopmental disorder with global developmental delay, primary microcephaly, short stature, and craniofacial anomalies.” | 0.98 | phenotype_alias_lexicon_v2 |
| population | Population | “METHODS: We collate clinical information of 4 individuals with germline DRG1 variants and use in silico, in vitro, and cell-based studies to study the pathogenicity of these alleles.” | 0.80 | saudi_context_rules_v1 |
| variant | p.Asn248Phe | “RESULTS: We identified private germline DRG1 variants, including 3 stop-gained p.Gly54∗, p.Arg140∗, p.Lys263∗, and a p.Asn248Phe missense variant.” | 0.95 | hgvs_regex_v1 |